Test with caution or delay:
1. Active acute gastroenteritis:
- Wait 2-4 weeks after resolution
- Acute infection dramatically skews results
3. Current antibiotic use:
- Wait 4 weeks after completion
- Results won't reflect baseline state
- Exception: If testing to assess antibiotic impact
Interpret with context:
Immunocompromised patients:
- May have atypical organisms or opportunistic pathogens
- Lower threshold for concern with dysbiosis
- Coordinate with oncology/infectious disease teams
Post-surgical:
- Gastric bypass, colectomy, and ileostomy affect the microbiome
- Interpretation must account for altered anatomy
- May have permanently altered "optimal" ranges
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